Index

A

all_properties (dplabtools.slides.GenericSlide property)

array (dplabtools.slides.processing.mask.base.BaseMask property) AsapReader (class in dplabtools.slides.annotations)

B

BaseDataset (class in dplabtools.slides.processing.dataset.base) BaseMask (class in dplabtools.slides.processing.mask.base)

BasePatches (class in dplabtools.slides.patches.locations.base) BasePatchesPool (class in dplabtools.slides.patches.locations.pools) BaseReader (class in dplabtools.slides.annotations.readers.base)

C

class_name (dplabtools.slides.patches.locations.base.BasePatches property)

classes_array (dplabtools.slides.processing.WSIInference property)

D

DiskPatchExtractor (class in dplabtools.slides.patches)

DiskPatchExtractorPool (class in dplabtools.slides.patches)

E

external_mpp (dplabtools.slides.GenericSlide property)

G

GenericSlide (class in dplabtools.slides) get_property() (dplabtools.slides.GenericSlide method)

get_region() (dplabtools.slides.GenericSlide method) get_region_array() (dplabtools.slides.GenericSlide method)

I

interpolation_method (dplabtools.slides.processing.WSIInference property)

L

label_image (dplabtools.slides.GenericSlide property) level (dplabtools.slides.processing.mask.base.BaseMask property) level_count (dplabtools.slides.GenericSlide property) level_count_extra (dplabtools.slides.GenericSlide property) level_dimensions (dplabtools.slides.GenericSlide property) level_dimensions_extra (dplabtools.slides.GenericSlide property) level_downsamples (dplabtools.slides.GenericSlide property)

level_images_extra (dplabtools.slides.GenericSlide property) level_mpp_values (dplabtools.slides.GenericSlide property) level_mpp_values_extra (dplabtools.slides.GenericSlide property) level_or_mpp (dplabtools.slides.patches.locations.base.BasePatches property) level_resamples_extra (dplabtools.slides.GenericSlide property) level_zero_resampling (dplabtools.slides.GenericSlide property) lib_name (dplabtools.slides.GenericSlide property)

M

magnification (dplabtools.slides.GenericSlide property) manifest_id (dplabtools.slides.patches.DiskPatchExtractor property) (dplabtools.slides.patches.MultiResDiskPatchExtractor property) manifest_ids (dplabtools.slides.patches.DiskPatchExtractorPool property) (dplabtools.slides.patches.MultiResDiskPatchExtractorPool property) mask_shape (dplabtools.slides.patches.locations.base.BasePatches property) MemPatchExtractor (class in dplabtools.slides.patches) MemPatchExtractorPool (class in dplabtools.slides.patches)

Methods and properties common to all patch classes Methods and properties common to mask classes mpp_data (dplabtools.slides.GenericSlide property) mpp_level_margin (dplabtools.slides.GenericSlide property) mpp_round_decimal_places (dplabtools.slides.GenericSlide property) MultiResDiskPatchExtractor (class in dplabtools.slides.patches) MultiResDiskPatchExtractorPool (class in dplabtools.slides.patches) MultiResMemPatchExtractor (class in dplabtools.slides.patches) MultiResMemPatchExtractorPool (class in dplabtools.slides.patches)

P

padding_margin_pixels (dplabtools.slides.GenericSlide property) param_info (dplabtools.slides.patches.locations.base.BasePatches property) Parameters common in all patch classes patch_count (dplabtools.slides.patches.DiskPatchExtractor property) (dplabtools.slides.patches.DiskPatchExtractorPool property) (dplabtools.slides.patches.locations.base.BasePatches property) (dplabtools.slides.patches.locations.pools.BasePatchesPool property) (dplabtools.slides.patches.MemPatchExtractor property) (dplabtools.slides.patches.MemPatchExtractorPool property) (dplabtools.slides.patches.MultiResDiskPatchExtractor property) (dplabtools.slides.patches.MultiResDiskPatchExtractorPool property) (dplabtools.slides.patches.MultiResMemPatchExtractor property) (dplabtools.slides.patches.MultiResMemPatchExtractorPool property) patch_data (dplabtools.slides.patches.DiskPatchExtractor property) (dplabtools.slides.patches.locations.base.BasePatches property) (dplabtools.slides.patches.MemPatchExtractor property) (dplabtools.slides.patches.MultiResDiskPatchExtractor property) (dplabtools.slides.patches.MultiResMemPatchExtractor property) patch_data_mask_level (dplabtools.slides.patches.locations.base.BasePatches property) patch_details (dplabtools.slides.patches.locations.pools.BasePatchesPool property) patch_info (dplabtools.slides.patches.locations.base.BasePatches property) (dplabtools.slides.patches.locations.pools.BasePatchesPool property) patch_labels (dplabtools.slides.patches.DiskPatchExtractor property) (dplabtools.slides.patches.locations.base.BasePatches property) (dplabtools.slides.patches.locations.pools.BasePatchesPool property) (dplabtools.slides.patches.MemPatchExtractor property) (dplabtools.slides.patches.MultiResDiskPatchExtractor property) (dplabtools.slides.patches.MultiResMemPatchExtractor property)

patch_list (dplabtools.slides.patches.MemPatchExtractorPool property) (dplabtools.slides.patches.MultiResMemPatchExtractorPool property) patch_size (dplabtools.slides.patches.locations.base.BasePatches property) patch_stream (dplabtools.slides.patches.MemPatchExtractor property) (dplabtools.slides.patches.MultiResMemPatchExtractor property) patches (dplabtools.slides.processing.dataset.base.BaseDataset property) patchset_count (dplabtools.slides.patches.MultiResDiskPatchExtractorPool property) (dplabtools.slides.patches.MultiResMemPatchExtractorPool property) patchset_counter (dplabtools.slides.patches.MultiResDiskPatchExtractor property) pids (dplabtools.slides.patches.DiskPatchExtractorPool property) (dplabtools.slides.patches.locations.pools.BasePatchesPool property) (dplabtools.slides.patches.MemPatchExtractorPool property) (dplabtools.slides.patches.MultiResDiskPatchExtractorPool property) (dplabtools.slides.patches.MultiResMemPatchExtractorPool property) polygon_labels (dplabtools.slides.patches.locations.base.BasePatches property) PolygonRegionCustomPatches (class in dplabtools.slides.patches) PolygonRegionGridPatches (class in dplabtools.slides.patches) PolygonRegionGridPatchesPool (class in dplabtools.slides.patches) PolygonRegionPoissonDiskPatches (class in dplabtools.slides.patches) PolygonRegionPoissonDiskPatchesPool (class in dplabtools.slides.patches) PolygonRegionRandomPatches (class in dplabtools.slides.patches) PolygonRegionRandomPatchesPool (class in dplabtools.slides.patches) polygons (dplabtools.slides.annotations.readers.base.BaseReader property) process_dataset() (dplabtools.slides.processing.WSIInference method) project_data (dplabtools.slides.annotations.QuPathProjectReader property)

Q

QuPathProjectReader (class in dplabtools.slides.annotations)

R

range_max_magnification (dplabtools.slides.GenericSlide property)

range_min_mpp (dplabtools.slides.GenericSlide property) resampling_filter (dplabtools.slides.GenericSlide property)

S

save_array() (dplabtools.slides.processing.mask.base.BaseMask method) save_class_array() (dplabtools.slides.processing.WSIInference method) save_class_png() (dplabtools.slides.processing.WSIInference method) save_class_tif() (dplabtools.slides.processing.WSIInference method) save_classes_array() (dplabtools.slides.processing.WSIInference method) save_colorbar_png() (dplabtools.slides.processing.WSIHeatmap method) save_json() (dplabtools.slides.annotations.QuPathProjectReader method) (dplabtools.slides.annotations.readers.base.BaseReader method) save_overlay_png() (dplabtools.slides.processing.mask.base.BaseMask method) (dplabtools.slides.processing.WSIHeatmap method) save_patches_image_type (dplabtools.slides.processing.dataset.base.BaseDataset attribute) save_png() (dplabtools.slides.processing.mask.base.BaseMask method) (dplabtools.slides.processing.WSIHeatmap method) save_preview_image() (dplabtools.slides.patches.locations.base.BasePatches method) save_tif() (dplabtools.slides.processing.WSIHeatmap method)

SedeenReader (class in dplabtools.slides.annotations) set_external_mpp() (dplabtools.slides.GenericSlide class method) set_interpolation_method() (dplabtools.slides.processing.WSIInference class method) set_level_zero_resampling() (dplabtools.slides.GenericSlide class method) set_mpp_level_margin() (dplabtools.slides.GenericSlide class method) set_mpp_round_decimal_places() (dplabtools.slides.GenericSlide class method) set_padding_margin_pixels() (dplabtools.slides.GenericSlide class method) set_range_max_magnification() (dplabtools.slides.GenericSlide class method) set_range_min_mpp() (dplabtools.slides.GenericSlide class method) set_resampling_filter() (dplabtools.slides.GenericSlide class method) shapely_polygons (dplabtools.slides.patches.locations.base.BasePatches property) slide_file (dplabtools.slides.GenericSlide property) slide_id (dplabtools.slides.GenericSlide property) slide_name (dplabtools.slides.GenericSlide property) slide_object (dplabtools.slides.GenericSlide property)

T

thumbnail_image (dplabtools.slides.GenericSlide property)

torch_device (dplabtools.slides.processing.WSIInference property)

W

WholeImageCustomPatches (class in dplabtools.slides.patches) WholeImageGridPatches (class in dplabtools.slides.patches) WholeImageGridPatchesPool (class in dplabtools.slides.patches) WholeImageInvertedCustomPatches (class in dplabtools.slides.patches) WholeImageInvertedGridPatches (class in dplabtools.slides.patches) WholeImageInvertedGridPatchesPool (class in dplabtools.slides.patches) WholeImageInvertedPoissonDiskPatches (class in dplabtools.slides.patches) WholeImageInvertedPoissonDiskPatchesPool (class in dplabtools.slides.patches) WholeImageInvertedRandomPatches (class in dplabtools.slides.patches) WholeImageInvertedRandomPatchesPool (class in dplabtools.slides.patches) WholeImagePoissonDiskPatches (class in dplabtools.slides.patches)

WholeImagePoissonDiskPatchesPool (class in dplabtools.slides.patches) WholeImageRandomPatches (class in dplabtools.slides.patches) WholeImageRandomPatchesPool (class in dplabtools.slides.patches) wsi_file (dplabtools.slides.patches.locations.base.BasePatches property) wsi_slide (dplabtools.slides.patches.locations.base.BasePatches property) WSIDataset (class in dplabtools.slides.processing) WSIHeatmap (class in dplabtools.slides.processing) WSIInference (class in dplabtools.slides.processing) WSIMultiResDataset (class in dplabtools.slides.processing) WSIPolygonMask (class in dplabtools.slides.processing) WSITissueMask (class in dplabtools.slides.processing)